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Protein Homology Modeling in Discovery Studio- Training
Overview - Protein Homology Modeling in Discovery Studio Training
The course will provide an overview of protein homology modeling in Discovery Studio starting from a complete sequence alignment. This workshop follows on from the Sequence Analysis for Homology Modeling Workshop.
On completion of the workshop the user wil lhave covered:
- Construction of a homology model construction using MODELER
- Validation and analysis of models using MODELER PDF energies and DOPE scores
- Validation and analysis of models using Profiles-3D and Evolutionary Trace
- Modeling loop regions in the homology model using MODELER and LOOPER
- Overall model refinement including side chain placement using ChiRotor
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