Sequence Analysis Software and Services

With the abundance of sequence data and related biological data in the public domain, the job of the bioinformaticians is as important as it was during the sequencing of the human genome. Today, you are probably still facing disparate data formats and legacy data structures, and you are continually interested in adding the newest tools into your research environment. Hence, you may need a flexible platform to combine all of these new databases and applications into your research workflow.

Integrate Bioinformatics Software

SciTegic Pipeline Pilot provides capabilities for application and data integration that will help you bring all your bioinformatics software together. Specifically, SciTegic Pipeline Pilot can be used as a sequence analysis and biological processing platform, and it's collection of common bioinformatics tools allows you to build a variety of practical bioinformatics workflows. You can perform such tasks as:

• sequence annotation and manipulation
• sequence similarity searching
• profile building

As well as providing extensive scientific capabilities, we recognize that you also have many computational approaches that you have already validated, whether they are developed in-house, or acquired from vendors. SciTegic Pipeline Pilot allows you to integrate these and include them in your workflow, automatically handling data transformation and platform issues. In fact, the integration work may already be done for you. SciTegic has integrated several existing bioinformatics applications and selected open source software tools, such as bioPerl and EMBOSS.

Automate Bioinformatics Workflows

In addition to integrating your applications, Pipeline Pilot can also automate the data manipulation process, allowing you to retrieve data from public databases and combine it with data you already have.

Related Application notes:
Creating Custom Bioinformatics Reports
Finding siRNA Off-Target Sites
Information Extraction from Text Documents using Pipeline Pilot
Ortholog Comparison
PubMed Trend Analysis

Related Products and Services:

• Sequence Analysis Collection for SciTegic Pipeline Pilot - analyze biological sequences
• Text Analytics Collection for SciTegic Pipeline Pilot - mine PubMed, US Patent Office, NIH Grants and personal documents
• Reporting Collection for SciTegic Pipeline Pilot - generate tables, charts and images for scientific reports
• Integration Collection for SciTegic Pipeline Pilot - develop custom components
• R Statistics Collection for SciTegic Pipeline Pilot - perform data manipulation, clustering, learning, and data analysis with tools based on the R statistics package
• Contract Research and Scientific Consulting Services - team up Accelrys' in-silico design service team who have expertise in our full suite of bioinformatics software for sequence analysis